Two different regulators, two different sets of forms
Most founders treat "company filings" as one thing, handled by one person. With foreign investment, there are really two regulators looking at two different questions, on two different portals.
The Ministry of Corporate Affairs (MCA), through the Registrar of Companies, cares about the company itself, its accounts and its annual return, filed on forms like AOC-4 and MGT-7 on the MCA portal. The Reserve Bank of India (RBI), under FEMA, cares about the foreign money: that it came in properly and is reported, filed on the FIRMS portal under the Single Master Form.
Doing the MCA filings does not cover the RBI ones, and vice versa. This is the single most common gap we see: the ROC forms are filed on time, everyone assumes compliance is done, and the RBI filings on a portal the regular accountant never logs into are simply never made. They only surface later, during due diligence, an audit, or the next round of funding.
The FLA return: the annual one everyone forgets
The FLA (Foreign Liabilities and Assets) return is the one that catches even companies who got FC-GPR and FC-TRS right, because it's annual and easy to forget. Any Indian company that has received foreign investment, or holds foreign assets, has to file an FLA return to the RBI each year, normally by 15 July, reporting the position as at the end of the previous financial year.
The obligation doesn't stop after the year you took the investment. As long as the foreign shareholding sits on your books, the FLA return falls due every single year, whether or not anything changed. A company that took foreign money once and filed FC-GPR can still be non-compliant for years of missed FLA returns.
Like the other two, the FLA is a FEMA filing to the RBI, separate from anything on the MCA side, and a missed FLA return also attracts a Late Submission Fee. Putting it on a recurring July calendar is the simplest way to stop it slipping.
A worked example: Meera's company, two years behind
Meera runs a small Bengaluru product company. Two years ago, her cousin Rohan. An NRI in Dubai, invested and was allotted shares; last year, a resident angel sold part of his stake to Rohan as well. Meera's accountant filed the company's AOC-4 and MGT-7 with the ROC on time each year, so she believed everything was in order.
When a new investor's due-diligence team asked for the FIRMS filings, the gap appeared. The original allotment to Rohan needed an FC-GPR within about 30 days, never filed. The later resident-to-NRI share sale needed an FC-TRS within about 60 days, also missed. And because the company had held foreign investment across two financial years, two annual FLA returns, each due around 15 July, had come and gone unfiled.
None of this showed up on the MCA portal, because none of it lives there. The way through is to file each pending form on the FIRMS portal with the applicable Late Submission Fee, attach the remittance proof and the valuation that supported the original share price, and then set a recurring reminder for the next FLA. The transaction wasn't unwound and Meera wasn't penalised beyond the late fees, but it had to be regularised before the new round could close, which is the usual pattern: the gap is fixable, it just has to be found and cleared.
Why a filing bounces back on the FIRMS portal
Filing FC-GPR or FC-TRS correctly and on time doesn't guarantee it clears on the first attempt. A handful of practical mismatches account for most of the rejections practitioners report. The FIRC amount in Part A has to match the inward remittance exactly, and a small gap from bank charges or a currency-conversion rate that differs from the FIRC's own rate is enough to trigger a query. The Entity Master Form, the company's own profile on the FIRMS portal, has to be current and approved before any FC-GPR or FC-TRS can even be submitted against it, so an unreflected address change, director change, or similar update forces an EMF amendment first, a filing before the filing. A fair value certificate that was current when drafted can go stale by the time the form is actually submitted if there's a gap between the transaction and getting to the paperwork. And for a multi-layered investor structure, a Mauritius or Singapore holding vehicle investing on behalf of a fund, incomplete beneficial-ownership disclosure down to the actual natural person behind it is an increasingly reported rejection reason, one that often shows up as a vague "KYC incomplete" remark rather than being flagged as a UBO issue directly.
When it's not just a late report: RBI compounding
Meera's case was routine, a late report, fixed with the Late Submission Fee. Not every gap is that simple. The LSF only covers a genuine reporting delay, even a multi-year one. If the real problem goes deeper, the share price didn't actually meet the FEMA pricing rules, or a sector condition wasn't met, the route is a formal compounding application to the RBI instead.
Compounding is filed through the RBI's PRAVAAH portal (mandatory for this since May 2025), with a ₹10,000 application fee plus GST, to the Regional Office where your company is registered. RBI works out the compounding sum from its own published computation matrix, which prices different categories of contravention differently, capped overall at three times the amount involved under FEMA. An April 2025 amendment added a new discretionary ₹2,00,000 cap, but that specifically covers a catch-all bucket of miscellaneous non-reporting contraventions, RBI's matrix appears to price a straightforward FC-GPR, FC-TRS or FLA reporting delay under its own separate categories, so don't assume the ₹2,00,000 figure is what a delay like this would actually cost you. The precise number depends on which category your delay falls into and the size of the transaction, exactly the kind of thing worth confirming with your CA before filing rather than estimating from a single figure quoted online. RBI is expected to decide within 180 days of a completed application.
The one thing worth acting on fast regardless of the final number: coming forward yourself, before the Enforcement Directorate opens a case, is treated far more favourably than waiting to be caught, and once ED is involved, compounding can stop being available at all except with special consent.