A foreign holding entity doesn't satisfy the disclosure, it adds a layer to look through
Section 90 was written for exactly this structure. Its whole purpose is to look through a corporate, trust, or pooled-vehicle shareholder to the natural person who actually controls or benefits from the stake, because a company register that only shows another company's name tells the Registrar nothing about who's really there. An overseas holding entity being properly registered and compliant in its own jurisdiction has no bearing on this; the Indian filing obligation runs independently of whatever paperwork exists abroad.
The 10% test, and the BEN-1 to BEN-2 sequence
The threshold is 10%, of shares, voting rights, or the right to receive distributions, whichever is higher, counting direct and indirect holding together. Multiple layers between you and the Indian company don't reduce this: a trust owned by a holding company that owns the shares still traces back to you if you're the one who ultimately controls or benefits from it.
Once that's established, you as the individual file a BEN-1 declaration with the company; the company then files Form BEN-2 with the Registrar within 30 days of receiving it. If genuinely no individual meets the criteria after a proper enquiry, the rules deem the company's senior managing official the significant beneficial owner instead, so the register is never simply left blank.
What goes wrong without a CA
The recurring pattern: the holding structure was set up correctly for tax and succession purposes, but nobody separately asked whether it triggered a BEN-1/BEN-2 disclosure on the Indian company's side, because it doesn't look like an Indian compliance question at all, it looks like a foreign-entity matter. It surfaces later, usually at a funding round's diligence or a routine ROC scrutiny. MCA's real adjudication orders show the exposure scales hard with time: penalties in the range of a couple of lakh rupees for a filing found several months late, climbing toward the statutory caps once the gap stretches past a year, for the company and personally for the officer in default.